Publications

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Listed below are the Publications supported by Technology platforms at C-CAMP / Bangalore Life Science Cluster.

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2015

Gopi K, Renu K, Vishwanath BSannanaik, Jayaraman G. 2015. Protective effect of Euphorbia hirta and its components against snake venom induced lethality. [Mass spectrometry - Metabolomics]. J Ethnopharmacol. 165:180-90.

Yadav S, Garner K, Georgiev P, Li M, Gomez-Espinosa E, Panda A, Mathre S, Okkenhaug H, Cockcroft S, Raghu P. 2015. RDGBα, a PtdIns-PtdOH transfer protein, regulates G-protein-coupled PtdIns(4,5)P2 signalling during Drosophila phototransduction.[Drosophila Facility]. J Cell Sci. 128(17):3330-44.

Yadav S, Garner K, Georgiev P, Li M, Gomez-Espinosa E, Panda A, Mathre S, Okkenhaug H, Cockcroft S, Raghu P. 2015. RDGBα, a PtdIns-PtdOH transfer protein, regulates G-protein-coupled PtdIns(4,5)P2 signalling during Drosophila phototransduction.[Drosophila Facility]. J Cell Sci. 128(17):3330-44.

Yadav S, Garner K, Georgiev P, Li M, Gomez-Espinosa E, Panda A, Mathre S, Okkenhaug H, Cockcroft S, Raghu P. 2015. RDGBα, a PtdIns-PtdOH transfer protein, regulates G-protein-coupled PtdIns(4,5)P2 signalling during Drosophila phototransduction.[Drosophila Facility]. J Cell Sci. 128(17):3330-44.

Ghosh B, Mitra J, Chakraborty S, Bhattacharyya J, Chakraborty A, Sen SKumar, Neerathilingam M. 2015. Simple Detection Methods for Antinutritive Factor β-ODAP Present in Lathyrus sativus L. by High Pressure Liquid Chromatography and Thin Layer Chromatography. [Protein Technology Core]. PLoS One. 10(11):e0140649.

2016

Ambardar S, Singh HRussiachan, Gowda M, Vakhlu J. 2016. Comparative Metagenomics Reveal Phylum Level Temporal and Spatial Changes in Mycobiome of Belowground Parts of Crocus sativus [Next Gen Genomics Facility]. PLoS One. 11(9):e0163300.

Kumar N, Gupta DGopal, Kumar S, al. et.. 2016. Exploring Packaged Microvesicle Proteome Composition of Chinese Hamster Ovary Secretome [Mass Spectrometry - Proteomics]. Journal of Bioprocessing & Biotechniques. 6:1-11.

Banerjee S, Coussens NP, Gallat F-X, Sathyanarayanan N, Srikanth J, Yagi KJ, Gray JSS, Tobe SS, Stay B, Chavas LMG et al.. 2016. Structure of a heterogeneous, glycosylated, lipid-bound, in vivo-grown protein crystal at atomic resolution from the viviparous cockroach Diploptera punctata. [Mass spectrometry - Glycomics]. IUCrJ. 3(Pt 4):282-93.

Banerjee S, Coussens NP, Gallat F-X, Sathyanarayanan N, Srikanth J, Yagi KJ, Gray JSS, Tobe SS, Stay B, Chavas LMG et al.. 2016. Structure of a heterogeneous, glycosylated, lipid-bound, in vivo-grown protein crystal at atomic resolution from the viviparous cockroach Diploptera punctata. [Mass spectrometry - Glycomics]. IUCrJ. 3(Pt 4):282-93.

2017

Nadiya F, Anjali N, Thomas J, Gangaprasad A, Sabu KK. 2017. Data on identification of conserved and novel miRNAs in Elettaria cardamomum [Next Gen Genomics Facility]. Data Brief. 14:789-792.

Ghatak A, Bharatham N, Shanbhag AP, Datta S, Venkatraman J. 2017. Delineating Substrate Diversity of Disparate Short-Chain Dehydrogenase Reductase from Debaryomyces hansenii [Bugworks Res. Pvt. Ltd., a C-CAMP Startup]. PLoS One. 12(1):e0170202.

Bharatham N, Finch KE, Min J, Mayasundari A, Dyer MA, R Guy K, Bashford D. 2017. Performance of a docking/molecular dynamics protocol for virtual screening of nutlin-class inhibitors of Mdmx.. J Mol Graph Model. 74:54-60.

Vikram A, Lewarchik CM, Yoon J-Y, Naqvi A, Kumar S, Morgan GM, Jacobs JS, Li Q, Kim Y-R, Kassan M et al.. 2017. Sirtuin 1 regulates cardiac electrical activity by deacetylating the cardiac sodium channel.. Nat Med.

Vikram A, Lewarchik CM, Yoon J-Y, Naqvi A, Kumar S, Morgan GM, Jacobs JS, Li Q, Kim Y-R, Kassan M et al.. 2017. Sirtuin 1 regulates cardiac electrical activity by deacetylating the cardiac sodium channel.. Nat Med.

Deshpande AB, Anamika K, Jha V, Chidley HG, Oak PS, Kadoo NY, Pujari KH, Giri AP, Gupta VS. 2017. Transcriptional transitions in Alphonso mango (Mangifera indica L.) during fruit development and ripening explain its distinct aroma and shelf life characteristics [Next Gen Genomics Facility]. Sci Rep. 7(1):8711.

Deshpande AB, Anamika K, Jha V, Chidley HG, Oak PS, Kadoo NY, Pujari KH, Giri AP, Gupta VS. 2017. Transcriptional transitions in Alphonso mango (Mangifera indica L.) during fruit development and ripening explain its distinct aroma and shelf life characteristics [Next Gen Genomics Facility]. Sci Rep. 7(1):8711.

Nadiya F, Anjali N, Thomas J, Gangaprasad A, Sabu KK. 2017. Transcriptome profiling of Elettaria cardamomum (L.) Maton (small cardamom).. Genom Data. 11:102-103.

2018

Bairy S, Gopalan LNarayanan, Setty TGangi, Srinivasachari S, Manjunath L, Kumar JPrakash, Guntupalli SR, Bose S, Nayak V, Ghosh S et al.. 2018. Automation aided optimization of cloning, expression and purification of enzymes of the bacterial sialic acid catabolic and sialylation pathways enzymes for structural studies. [Protein Technology (INT)].

Bairy S, Gopalan LNarayanan, Setty TGangi, Srinivasachari S, Manjunath L, Kumar JPrakash, Guntupalli SR, Bose S, Nayak V, Ghosh S et al.. 2018. Automation aided optimization of cloning, expression and purification of enzymes of the bacterial sialic acid catabolic and sialylation pathways enzymes for structural studies. [Protein Technology (INT)].

Bairy S, Gopalan LNarayanan, Setty TGangi, Srinivasachari S, Manjunath L, Kumar JPrakash, Guntupalli SR, Bose S, Nayak V, Ghosh S et al.. 2018. Automation aided optimization of cloning, expression and purification of enzymes of the bacterial sialic acid catabolic and sialylation pathways enzymes for structural studies. [Protein Technology (INT)].

Borah D, Nainamalai S, Gopalakrishnan S, Rout J, Alharbi NS, Alharbi SAli, Nooruddin T. 2018. Biolubricant potential of exopolysaccharides from the cyanobacterium Cyanothece epiphytica. [Mass Spectrometry - Glycomics]. Appl Microbiol Biotechnol. 102(8):3635-3647.

Dias M, Pattabiraman C, Siddappa S, Gowda M, Shet A, Smith D, Muehlemann B, Tamma K, Solomon T, Jones T et al.. 2018. Complete assembly of a dengue virus type 3 genome from a recent genotype III clade by metagenomic sequencing of serum.[Next Gen Genomics Facility (INT)]. Wellcome Open Res. 3:44.

Shadrick WR, Slavish PJ, Chai SC, Waddell B, Connelly M, Low JA, Tallant C, Young BM, Bharatham N, Knapp S et al.. 2018. Exploiting a water network to achieve enthalpy-driven, bromodomain-selective BET inhibitors. Bioorganic & Medicinal Chemistry. 26:25-36.

Lomate PR, Dewangan V, Mahajan N, Kumar Y, Kulkarni A, Wang L, Saxsena S, Gupta VS, Giri AP. 2018. Integrated transcriptomic and proteomic analyses suggest the participation of endogenous protease inhibitors in the regulation of protease gene expression in [Next Gen Genomics Facility]. Mol Cell Proteomics.

Lomate PR, Dewangan V, Mahajan N, Kumar Y, Kulkarni A, Wang L, Saxsena S, Gupta VS, Giri AP. 2018. Integrated transcriptomic and proteomic analyses suggest the participation of endogenous protease inhibitors in the regulation of protease gene expression in [Next Gen Genomics Facility]. Mol Cell Proteomics.

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