Publications

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List of Publications from C-CAMP facilities

Flow and Imaging
  • Harshil H. Bhatt et al., 2016. Isolation and Characterization of a Halophilic Cyanobacterium Euhalothece SLVH01 from Sambhar Salt Lake, India. Int.J.Curr.Microbiol.App.Sci (2016) 5(2): 215-224  
  • S. Nalini et al., 2015 Production and characterization of lipopeptide from Bacillus cereus SNAU01 under solid state fermentation and its potential application as anti-biofilm agent. Biocatalysis and Agricultural Biotechnology 5 (2016):123–132
  • Pious Thomas and Krishna M. Reddy. 2013. Microscopic elucidation of abundant endophytic bacteria colonizing the cell wall–plasma membrane peri-space in the shoot-tip tissue of banana. Oxford Journal AoB PLANTS (2013) 5 : plt011
  • Mrinal Srivastava et al. An inhibitor of nonhomologous end-joining abrogates double-strand break repair and impedes cancer progression. Cell 2012 December 21; 151(7): 1474–1487
  • Gowrishankar K et al., 2012. Active remodelling of cortical actin regulates spatiotemporal organization of cell surface molecules.  Cell 2012 Jun 8;149(6):1353-67
  • Perumalsamy LR et al., 2012. Distinct Spatial and Molecular Features of Notch Pathway Assembly in Regulatory T Cells. Sci Signal 24;5(234)
  • Ghosh S et.al., 2012. Dynamic Imaging of Homo-FRET in Live Cells by Fluorescence Anisotropy Microscopy. Methods in Enzymology 505, 291-327
  • Ramachandran G & Udgoankar J, 2012. Evidence for the existence of a secondary pathway for fibril growth during the aggregation of tau.  J. Mol. Biol. 421(2-3):296-314
  • Gupta, Soumya et al., 2012. Developmental Heterogeneity in DNA Packaging Patterns Influences T-Cell Activation and Transmigration. PLOS ONE  7, 9, e43718
  • Singh J et al., 2012. Development of the structural core and of conformational heterogeneity during the conversion of oligomers of the mouse prion protein to worm-like amyloid fibrils. J. Mol Biol. 423, 217-231
  • Adurthi S et al., 2012. Functional Tumor Infiltrating Th1 and Th2 Effectors In Large Early - Stage Cervical Cancer Are Suppressed By Regulatory T Cells.  Int J Gynecol Cancer, 22, 7:1130-7
  • Preethy CP et al., 2012. Antiproliferative property of n-hexane and chloroform extracts of Anisomeles malabarica (L). R. Br. in HPV16-positive human cervical cancer cells.  Journal of  Pharmacology & Pharmacotherapeutics 3(1):26-34.
  • Sufia Sadaf et al., 2012. Synaptic Activity in Serotonergic Neurons Is Required for Air-Puff Stimulated Flight in Drosophila melanogaster. PLoS ONE 7(9): e46405
  • Jayaram V et al., 2012. Poor sperm quality and advancing age are associated with increased sperm DNa damage in infertile men. Andrologia 3(1):26-34.
  • Bose R et al., 2012. Germ cell abnormalities in streptozotocin induced diabetic mice do not correlate with blood glucose level.  J Assist Reprod Genet. 29(12):1405-13
  • Keshari RS et al., 2012. Neutrophil Extracellular Traps Contain Mitochondrial as well as Nuclear DNA and Exhibit Inflammatory Potential. Cytometry Part A, 81(3):238-47
Next Generation Genomics
  • Srinivasan R et al., 2013. Genomic analysis reveals a bi-layered epistatic control of “expensive” genes in Escherichia coli K-12: implications for gene silencing. Mol. Bio Syst., 2013
  • Kumar S et al., 2013. Draft Genome Sequence of Rhodococcus triatomae Strain BKS 15-14. Genome Announc. March/April 2013 vol. 1 no. 2 e00129-13
  • Kaur N et al., 2013. Draft Genome Sequence of Amycolatopsis decaplanina Strain DSM 44594. Genome Announc. March/April 2013 vol. 1 no. 2 e00138-13
  • Bala M et al., 2013. Draft Genome Sequence of Rhodococcus ruber Strain BKS 20-38. Genome Announc. March/April 2013 vol. 1 no. 2 e00139-13
  • Prabhakara S et al., 2013. Genome Sequencing Unveils a Novel Sea Enterotoxin-Carrying PVL Phage in Staphylococcus aureus ST772 from India PLoS ONE 8(3): e60013. doi:10.1371/journal.pone.0060013
  • Prabhakara S et al., 2012. Draft Genome Sequence of Staphylococcus aureus118 (ST772), a Major Disease Clone from India. J Bacteriol. 2012 Jul; 194 (14):3727-8
  • Kumar S et al., 2012. Genome Sequence of the Marine Bacterium Marinilabilia salmonicolor JCM 21150. J. Bacteriol. July 2012; 194 (14): 3746
  • Kumar et al., 2012. Genome Sequence of the Halotolerant Bacterium Imtechella halotolerans K1. J. Bacteriol. July 2012;194(14) 3731
  • Khatri et al., 2012. Draft Genome Sequence of Rhodovulum sp. Strain PH10, a Phototrophic Alphaproteobacterium Isolated from a Soil Sample of Mangrove of Namkhana, India. J. Bacteriol. November 2012; 194(22): 6363
  • Vikram et al., 2012. Draft Genome Sequence of the Nitrophenol-Degrading Actinomycete Rhodococcus imtechensis RKJ300. J. Bacteriol. July 2012; 194(13): 3543.
  • Krishna et al., 2012. Deep sequencing reveals unique small RNA repertoire that is regulated during head regeneration in Hydra magnipapillata. Nuleic Acid Res. (2012)
  • Supriya K et al., 2012. Draft genome sequence of Staphylococcus aureus ST672, an emerging disease clone from India. J Bacteriol. 2012 Dec; 194 (24):6496
  • Kumar S, Kaur N, Singh NK, Raghava GPS, Mayilraj S, 2013. Draft Genome Sequence of Streptomyces gancidicus Strain BKS 13-15.Genome Announc. Apr 18;1(2):e0015013
  • Bala M, Kumar S, Raghava GPS, Mayilraj S, 2013. Draft Genome Sequence of Rhodococcus qingshengii Strain BKS 20-40 Genome Announc.  Mar 28;1(2):e0012813
  • Singh NK, Kumar S, Raghava GPS, Mayilraj S, 2013. Draft Genome Sequence of Acinetobacter baumannii Strain MSP4-16. Genome Announc. 2013 Apr 4;1(2):e0013713
Mass Spectrometry
  • Bordoloi NK, Bhagowati P, Chaudhuri MK, Mukherjee AK (2016) Proteomics and Metabolomics Analyses to Elucidate the Desulfurization Pathway of Chelatococcus sp.. PLoS ONE 11(4): e0153547. doi:10.1371/journal.pone.0153547
  • Tamás Baranyai, Kata Herczeg, Zsófia Onódi, István Voszka, Károly Módos, Nikolett Marton, György Nagy, Imre Mäger, Matthew J. Wood, Samir El Andaloussi, Zoltán Pálinkás, Vikas Kumar, Péter Nagy, Ágnes Kittel, Edit Irén Buzás, Péter Ferdinandy, Zoltán Giricz "Isolation of Exosomes from Blood Plasma: Qualitative and Quantitative Comparison of Ultracentrifugation and Size Exclusion Chromatography Methods", December 2015, PLoS ONE, DOI: 10.1371/journal.pone.0145686
  • Papita Mandal, Naveen Verma, Sakshi Chauhan and and Raghuvir S. Tomar, "Unexpected histone H3 tail clipping activity of Glutamate dehydrogenase" May 14, 2013, J. Biol. Chem. published online
  • Neha Vyas, Ankita Walvekar, Dhananjay Tate, Vairavan Lakshmanan, Dhiru Bansal, Alessandra Lo Cicero, Graca Raposo, Dasaradhi Palakodeti & Jyotsna Dhawan, "Vertebrate Hedgehog is secreted on two types of extracellular vesicles with different signaling properties", November 2014, Scientific Reports 4, Article number: 7357 doi:10.1038/srep07357. 
  • Mukherjee AK, Kalita B, Thakur R,"Two acidic, anticoagulant PLA2 isoenzymes purified from the venom of monocled cobra Naja kaouthia exhibit different potency to inhibit thrombin and factor Xa via phospholipids independent, non-enzymatic mechanism", August 2014, PLoS One. 13;9(8):e101334. doi: 10.1371/journal.pone.0101334.
 
  • Ashis K. Mukherjee, Sumita Dutta, Stephen P. Mackessy, "A new C-type lectin (RVsnaclec) purified from venom of Daboia russelii russelii shows anticoagulant activity via inhibition of FXa and concentration-dependent differential response to platelets in a Ca2+-independent manner", November 2014, Thrombosis Research, Volume 134, Issue 5, Pages 1150–1156.
  • Thakur R, Chattopadhyay P, Mukherjee AK, "Biochemical and pharmacological characterization of a toxic fraction and its cytotoxin-like component isolated from Russell's viper (Daboia russelii russelii) venom", Comp Biochem Physiol C Toxicol Pharmacol. February 2015 ;168:55-65. doi: 10.1016/j.cbpc.2014.12.001.
  • Thakur R, Chattopadhyay P, Ghosh SS, Mukherjee AK, "Elucidation of procoagulant mechanism and pathophysiological significance of a new prothrombin activating metalloprotease purified from Daboia russelii russelii venom", June 2015 Toxicon; 100:1-12. doi: 10.1016/j.toxicon.2015.03.019.
  • Megha Dubeya, Abhishek K. Singha, Deepika Awasthia, Sheela Nagarkotia, Sachin Kumarb, Wahid Alic, Tulika Chandrac, Vikas Kumard, Manoj K. Barthwala, Kumaravelu Jagavelua, Francisco J. Sánchez-Gómeze, Santiago Lamase, Madhu Dikshita, "L-Plastin S-glutathionylation promotes reduced binding to β-actin and affects neutrophil functions", September 2015, Free Radical Biology and Medicine, Volume 86,  Pages 1–15
     
Protein Technology Core
  • Ranajay Saha, Pramod Kumar Verma, Surajit Rakshit, Suvrajit Saha, Satyajit Mayor & Samir Kumar Pal, 2013. "Light driven ultrafast electron transfer in oxidative redding of Green Fluorescent Proteins." Scientific Reports 3 : 1580 DOI: 10.1038/srep01580
  • Narendrakumar Sekar, Soumya Kariyadan Veetil and Muniasamy Neerathilingam, 2013. "Tender coconut water an economical growth medium for the production of recombinant proteins in Escherichia coli."  BMC Biotechnology 2013, September 2, 13:70,
 
Other Research at C-CAMP
  • Jeff Abramson, Armand S. Vartanian, 2013. Watch Water Flow, Science 14 June 2013: Vol. 340 no. 6138 pp. 1294-1295 DOI: 10.1126/science.1239270